Index

_

__isfrozen (FrozenClass attribute) __num_restarts (Hooks attribute)

__stats (Hooks attribute) _parNames (RegisterParams attribute) _parNamesReadOnly (RegisterParams attribute)

A

A (acoustic_1d_imex attribute) (advectionNd attribute) (allencahn_front_fullyimplicit attribute) (allencahn_fullyimplicit attribute), [1] (allencahn_periodic_fullyimplicit attribute) (battery_n_capacitors attribute) (buck_converter attribute) (generalized_fisher attribute) (GenericNDimFinDiff attribute) (heat2d_petsc_forced attribute) (heatNd_forced attribute) (heatNd_unforced attribute) (petsc_fisher_multiimplicit attribute) (Quench attribute) (testequation0d attribute) acceleration (class in implementations.datatype_classes.particles) acoustic_1d_imex (class in implementations.problem_classes.AcousticAdvection_1D_FD_imex) AdamsBashforthExplicit1Step (class in implementations.sweeper_classes.Multistep) AdamsMoultonImplicit1Step (class in implementations.sweeper_classes.Multistep) AdamsMoultonImplicit2Step (class in implementations.sweeper_classes.Multistep) AdaptiveCollocation (class in implementations.convergence_controller_classes.adaptive_collocation) Adaptivity (class in implementations.convergence_controller_classes.adaptivity) AdaptivityBase (class in implementations.convergence_controller_classes.adaptivity) AdaptivityCollocation (class in implementations.convergence_controller_classes.adaptivity) AdaptivityExtrapolationWithinQ (class in implementations.convergence_controller_classes.adaptivity) AdaptivityForConvergedCollocationProblems (class in implementations.convergence_controller_classes.adaptivity) AdaptivityPolynomialError (class in implementations.convergence_controller_classes.adaptivity) AdaptivityResidual (class in implementations.convergence_controller_classes.adaptivity) AdaptivityRK (class in implementations.convergence_controller_classes.adaptivity) add() (logging method) add_attr() (FrozenClass class method) add_axis() (SpectralHelper method) add_BC() (SpectralHelper method) add_component() (SpectralHelper method) add_convergence_controller() (Controller method) add_equation_lhs() (SpectralHelper method) add_hook() (Controller method) add_status_variable_to_level() (ConvergenceController method) add_status_variable_to_step() (ConvergenceController method) add_to_stats() (Hooks method) advectiondiffusion1d_imex (class in implementations.problem_classes.AdvectionDiffusionEquation_1D_FFT) advectiondiffusion1d_implicit (class in implementations.problem_classes.AdvectionDiffusionEquation_1D_FFT) advectionNd (class in implementations.problem_classes.AdvectionEquation_ND_FD) allencahn2d_imex (class in implementations.problem_classes.AllenCahn_2D_FFT) (class in implementations.problem_classes.AllenCahn_2D_FFT_gpu) allencahn2d_imex_stab (class in implementations.problem_classes.AllenCahn_2D_FFT) (class in implementations.problem_classes.AllenCahn_2D_FFT_gpu)

allencahn_front_finel (class in implementations.problem_classes.AllenCahn_1D_FD) allencahn_front_fullyimplicit (class in implementations.problem_classes.AllenCahn_1D_FD) allencahn_front_semiimplicit (class in implementations.problem_classes.AllenCahn_1D_FD) allencahn_fullyimplicit (class in implementations.problem_classes.AllenCahn_2D_FD) (class in implementations.problem_classes.AllenCahn_2D_FD_gpu) allencahn_imex (class in implementations.problem_classes.AllenCahn_MPIFFT) allencahn_imex_timeforcing (class in implementations.problem_classes.AllenCahn_MPIFFT) allencahn_multiimplicit (class in implementations.problem_classes.AllenCahn_2D_FD) (class in implementations.problem_classes.AllenCahn_2D_FD_gpu) allencahn_multiimplicit_v2 (class in implementations.problem_classes.AllenCahn_2D_FD) (class in implementations.problem_classes.AllenCahn_2D_FD_gpu) allencahn_periodic_fullyimplicit (class in implementations.problem_classes.AllenCahn_1D_FD) allencahn_periodic_multiimplicit (class in implementations.problem_classes.AllenCahn_1D_FD) allencahn_periodic_semiimplicit (class in implementations.problem_classes.AllenCahn_1D_FD) allencahn_semiimplicit (class in implementations.problem_classes.AllenCahn_2D_FD) (class in implementations.problem_classes.AllenCahn_2D_FD_gpu) allencahn_semiimplicit_v2 (class in implementations.problem_classes.AllenCahn_2D_FD) (class in implementations.problem_classes.AllenCahn_2D_FD_gpu) allencahn_temp_imex (class in implementations.problem_classes.AllenCahn_Temp_MPIFFT) Allreduce() (NCCLComm method) allreduce() (NCCLComm method) alpha (AdamsBashforthExplicit1Step attribute) (AdamsMoultonImplicit1Step attribute) (AdamsMoultonImplicit2Step attribute) (BackwardEuler attribute) (MultiStep attribute) AMat (petsc_grayscott_multiimplicit attribute) apply_BCs() (RayleighBenard method) apply_mass_matrix() (fenics_heat method) (fenics_vortex_2d method) (Problem method) ARK2 (class in implementations.sweeper_classes.Runge_Kutta) ARK3 (class in implementations.sweeper_classes.Runge_Kutta) ARK32 (class in implementations.sweeper_classes.Runge_Kutta) ARK324L2SAERK (class in implementations.sweeper_classes.Runge_Kutta) ARK324L2SAESDIRK (class in implementations.sweeper_classes.Runge_Kutta) ARK54 (class in implementations.sweeper_classes.Runge_Kutta) ARK548L2SA (class in implementations.sweeper_classes.Runge_Kutta) ARK548L2SAERK (class in implementations.sweeper_classes.Runge_Kutta) ARK548L2SAERK2 (class in implementations.sweeper_classes.Runge_Kutta) ARK548L2SAESDIRK (class in implementations.sweeper_classes.Runge_Kutta) ARK548L2SAESDIRK2 (class in implementations.sweeper_classes.Runge_Kutta) attrs (FrozenClass attribute) auzinger (class in implementations.problem_classes.Auzinger_implicit) axes (SpectralHelper attribute)

B

BackwardEuler (class in implementations.sweeper_classes.Multistep) (class in implementations.sweeper_classes.Runge_Kutta) Barrier() (NCCLComm method) base_transfer_mass (class in implementations.transfer_classes.BaseTransfer_mass) base_transfer_MPI (class in implementations.transfer_classes.BaseTransferMPI) BaseTransfer (class in core.base_transfer) BasicRestarting (class in implementations.convergence_controller_classes.basic_restarting) BasicRestartingMPI (class in implementations.convergence_controller_classes.basic_restarting) BasicRestartingNonMPI (class in implementations.convergence_controller_classes.basic_restarting) battery (class in implementations.problem_classes.Battery) battery_implicit (class in implementations.problem_classes.Battery) battery_n_capacitors (class in implementations.problem_classes.Battery) bc (fenics_heat attribute) (fenics_heat_mass attribute) (fenics_heat_mass_timebc attribute) bc_hom (fenics_heat_mass attribute) (fenics_heat_mass_timebc attribute) bc_hor (boussinesq_2d_imex attribute) BC_line_zero_matrix (SpectralHelper attribute) BC_mat (SpectralHelper attribute) BC_rhs_mask (SpectralHelper attribute) bc_ver (boussinesq_2d_imex attribute) BC_zero_index (SpectralHelper attribute) bcast() (cupy_mesh method) (mesh method) Bcast() (NCCLComm method) bcast() (petsc_vec method) BCs (SpectralHelper attribute) bdf2 (class in implementations.problem_classes.acoustic_helpers.standard_integrators) (class in implementations.problem_classes.boussinesq_helpers.standard_integrators) beta (AdamsBashforthExplicit1Step attribute) (AdamsMoultonImplicit1Step attribute) (AdamsMoultonImplicit2Step attribute) (BackwardEuler attribute) (MultiStep attribute)

border_padding() (in module helpers.transfer_helper) boris_2nd_order (class in implementations.sweeper_classes.boris_2nd_order) boris_solver() (penningtrap method) boussinesq_2d_imex (class in implementations.problem_classes.Boussinesq_2D_FD_imex) Brusselator (class in implementations.problem_classes.Brusselator) buck_converter (class in implementations.problem_classes.BuckConverter) build_f() (penningtrap method) Burgers1D (class in implementations.problem_classes.Burgers) Burgers2D (class in implementations.problem_classes.Burgers) ButcherTableau (class in implementations.sweeper_classes.Runge_Kutta) ButcherTableauClass (ARK32 attribute) (ARK324L2SAERK attribute) (ARK54 attribute) (ARK548L2SA attribute) (ARK548L2SAERK attribute) (ARK548L2SAESDIRK2 attribute) (Cash_Karp attribute) (DIRK43 attribute) (ESDIRK43 attribute) (ESDIRK53 attribute) (Heun_Euler attribute) (RungeKutta attribute) (RungeKuttaNystrom attribute) ButcherTableauClass_explicit (ARK32 attribute) (ARK54 attribute) (ARK548L2SA attribute) (RungeKuttaIMEX attribute) ButcherTableauEmbedded (class in implementations.sweeper_classes.Runge_Kutta) ButcherTableauNoCollUpdate (class in implementations.sweeper_classes.Runge_Kutta_Nystrom)

C

Cache (class in implementations.sweeper_classes.Multistep) cached_factorizations (GenericSpectralLinear attribute) Callback (class in implementations.problem_classes.boussinesq_helpers.helper_classes) Cash_Karp (class in implementations.sweeper_classes.Runge_Kutta) CFLLimit (class in implementations.problem_classes.RayleighBenard) ChebychevHelper (class in helpers.spectral_helper) check_BCs() (SpectralHelper method) check_convergence() (CheckConvergence static method) check_iteration_estimate() (controller_MPI method) check_iteration_status() (CheckConvergence method) (CheckIterationEstimatorNonMPI method) (ConvergenceController method) check_method() (ButcherTableau method) check_parameters() (AdaptiveCollocation method) (Adaptivity method) (AdaptivityCollocation method) (AdaptivityResidual method) (CheckIterationEstimatorNonMPI method) (ConvergenceController method) (EstimateExtrapolationErrorBase method) (EstimatePolynomialError method) (HotRod method) check_weights() (ButcherTableau method) (ButcherTableauEmbedded method) CheckConvergence (class in implementations.convergence_controller_classes.check_convergence) CheckIterationEstimatorNonMPI (class in implementations.convergence_controller_classes.check_iteration_estimator) ChemicalReaction3Var (class in implementations.problem_classes.odeSystem) coarse (base_transfer_mass attribute) (base_transfer_MPI attribute) (BaseTransfer attribute) coarse_prob (SpaceTransfer attribute) col (Fisher_full attribute) coll (Sweeper attribute) CollBase (class in core.collocation) CollocationError comm (allencahn_temp_imex attribute) (cupy_mesh attribute) (mesh attribute), [1] (SpectralHelper attribute) (SweeperMPI property) communicate_convergence() (CheckConvergence method) communicate_crash() (CrashBase method) communicate_tau_correction_for_full_interval() (SweeperMPI method) CommunicationError comp2_cupy_mesh (class in implementations.datatype_classes.cupy_mesh) comp2_mesh (class in implementations.datatype_classes.mesh) components (comp2_cupy_mesh attribute) (comp2_mesh attribute) (CuPyMultiComponentMesh attribute) (imex_cupy_mesh attribute) (imex_mesh attribute) (MultiComponentMesh attribute) (SpectralHelper attribute) compute_buoyancy_generation() (RayleighBenard method) compute_end_point() (boris_2nd_order method) (explicit method) (generic_implicit method) (generic_implicit_MPI method) (imex_1st_order method) (imex_1st_order_mass method) (imex_1st_order_MPI method) (multi_implicit method) (MultiStep method) (RungeKutta method) (RungeKuttaIMEX method) (RungeKuttaNystrom method) (Sweeper method) (SweeperMPI method) (verlet method)

compute_max_step_size() (CFLLimit static method) compute_Nusselt_numbers() (RayleighBenard method) compute_optimal_step_size() (AdaptivityBase method) compute_residual() (imex_1st_order_mass method) (MultiStep method) (Sweeper method) (SweeperMPI method) compute_residual_DAE() (in module implementations.problem_classes.generic_spectral) compute_residual_DAE_MPI() (in module implementations.problem_classes.generic_spectral) compute_viscous_dissipation() (RayleighBenard method) compute_vorticity() (Burgers2D method) (RayleighBenard method) connect_levels() (Step method) continue_periodic_array() (in module helpers.transfer_helper) Controller (class in core.controller) controller_MPI (class in implementations.controller_classes.controller_MPI) controller_nonMPI (class in implementations.controller_classes.controller_nonMPI) ControllerError convergence_control() (ConvergenceController method) ConvergenceController (class in core.convergence_controller) ConvergenceError convert_operator_matrix_to_operator() (SpectralHelper method) core module core.base_transfer module core.collocation module core.common module core.controller module core.convergence_controller module core.errors module core.hooks module core.level module core.problem module core.space_transfer module core.step module core.sweeper module count_switches() (battery_n_capacitors method) (DiscontinuousTestODE method) CrankNicolson (class in implementations.sweeper_classes.Runge_Kutta) CrashBase (class in implementations.convergence_controller_classes.crash) cupy_mesh (class in implementations.datatype_classes.cupy_mesh) CuPyMultiComponentMesh (class in implementations.datatype_classes.cupy_mesh)

D

D (allencahn_temp_imex attribute) D_upwind (boussinesq_2d_imex attribute) DataChecker (class in helpers.testing) DataError ddx (advectiondiffusion1d_imex attribute) debug (SpectralHelper attribute) debug() (ConvergenceController method) decrement() (WorkCounter method) default() (controller_MPI method) (controller_nonMPI method) delta_m (CollBase attribute) dependencies() (Adaptivity method) (AdaptivityBase method) (AdaptivityCollocation method) (AdaptivityExtrapolationWithinQ method) (AdaptivityForConvergedCollocationProblems method) (AdaptivityPolynomialError method) (BasicRestarting method) (CFLLimit method) (CheckConvergence method) (CheckIterationEstimatorNonMPI method) (ConvergenceController method) (EstimateContractionFactor method) (EstimateEmbeddedError method) (EstimateEmbeddedErrorCollocation method) (HotRod method) (NewtonInexactness method) (StepSizeLimiter method) determine_restart() (AdaptivityBase method) (AdaptivityCollocation method) (AdaptivityForConvergedCollocationProblems method) (BasicRestarting method) (BasicRestartingMPI method) (BasicRestartingNonMPI method) (ConvergenceController method) (HotRod method) dg() (ProtheroRobinson method) (ProtheroRobinsonAutonomous method) dg2() (ProtheroRobinsonAutonomous method) dgInv() (ProtheroRobinsonAutonomous method) dgInv_LIN() (ProtheroRobinsonAutonomous method) dgInv_NONLIN() (ProtheroRobinsonAutonomous method) diff_mask (GenericSpectralLinear attribute) dirk (class in implementations.problem_classes.acoustic_helpers.standard_integrators) (class in implementations.problem_classes.boussinesq_helpers.standard_integrators) DIRK43 (class in implementations.sweeper_classes.Runge_Kutta) DIRK43_2 (class in implementations.sweeper_classes.Runge_Kutta) DiscontinuousTestODE (class in implementations.problem_classes.DiscontinuousTestODE) dt (Level property) (Step property) dtype (SpectralHelper attribute) dtype_f (acoustic_1d_imex attribute) (advectiondiffusion1d_imex attribute) (advectiondiffusion1d_implicit attribute) (allencahn2d_imex attribute), [1] (allencahn_front_fullyimplicit attribute) (allencahn_front_semiimplicit attribute) (allencahn_fullyimplicit attribute), [1] (allencahn_multiimplicit attribute), [1] (allencahn_multiimplicit_v2 attribute), [1] (allencahn_periodic_fullyimplicit attribute) (allencahn_periodic_multiimplicit attribute) (allencahn_periodic_semiimplicit attribute) (allencahn_semiimplicit attribute), [1] (allencahn_semiimplicit_v2 attribute), [1] (allencahn_temp_imex attribute) (auzinger attribute) (battery attribute) (battery_implicit attribute) (battery_n_capacitors attribute) (boussinesq_2d_imex attribute) (buck_converter attribute) (Burgers1D attribute) (Burgers2D attribute) (ChemicalReaction3Var attribute) (DiscontinuousTestODE attribute) (fenics_grayscott attribute) (fenics_heat attribute) (fenics_vortex_2d attribute) (fermi_pasta_ulam_tsingou attribute) (full_solar_system attribute) (generalized_fisher attribute) (GenericNDimFinDiff attribute) (grayscott_mi_diffusion attribute) (grayscott_mi_linear attribute) (harmonic_oscillator attribute) (Heat1DChebychev attribute) (Heat1DUltraspherical attribute) (heat2d_petsc_forced attribute) (Heat2DChebychev attribute) (Heat2DUltraspherical attribute) (heatNd_forced attribute), [1] (heatNd_unforced attribute) (henon_heiles attribute) (IMEX_Laplacian_MPIFFT attribute) (JacobiElliptic attribute) (Kaps attribute) (logistics_equation attribute) (LorenzAttractor attribute) (nonlinear_ODE_1 attribute) (nonlinearschroedinger_fully_implicit attribute) (outer_solar_system attribute) (penningtrap attribute) (petsc_fisher_fullyimplicit attribute) (petsc_fisher_multiimplicit attribute) (petsc_fisher_semiimplicit attribute) (petsc_grayscott_fullyimplicit attribute) (petsc_grayscott_multiimplicit attribute) (petsc_grayscott_semiimplicit attribute) (piline attribute) (polynomial_testequation attribute) (polynomial_testequation_IMEX attribute) (Problem attribute) (ProtheroRobinson attribute) (ProtheroRobinsonAutonomous attribute) (Quench attribute) (QuenchIMEX attribute) (RayleighBenard attribute) (swfw_scalar attribute) (testequation0d attribute) (vanderpol attribute)

dtype_u (acoustic_1d_imex attribute) (advectiondiffusion1d_imex attribute) (advectiondiffusion1d_implicit attribute) (allencahn2d_imex attribute), [1] (allencahn_front_fullyimplicit attribute) (allencahn_fullyimplicit attribute), [1] (allencahn_periodic_fullyimplicit attribute) (allencahn_temp_imex attribute) (auzinger attribute) (battery_n_capacitors attribute) (boussinesq_2d_imex attribute) (buck_converter attribute) (Burgers1D attribute) (Burgers2D attribute) (ChemicalReaction3Var attribute) (DiscontinuousTestODE attribute) (fenics_grayscott attribute) (fenics_heat attribute) (fenics_vortex_2d attribute) (fermi_pasta_ulam_tsingou attribute) (full_solar_system attribute) (generalized_fisher attribute) (GenericNDimFinDiff attribute) (harmonic_oscillator attribute) (Heat1DChebychev attribute) (Heat1DUltraspherical attribute) (heat2d_petsc_forced attribute) (Heat2DChebychev attribute) (Heat2DUltraspherical attribute) (heatNd_forced attribute) (henon_heiles attribute) (IMEX_Laplacian_MPIFFT attribute) (JacobiElliptic attribute) (Kaps attribute) (logistics_equation attribute) (LorenzAttractor attribute) (nonlinear_ODE_1 attribute) (nonlinearschroedinger_fully_implicit attribute) (outer_solar_system attribute) (penningtrap attribute) (petsc_fisher_multiimplicit attribute) (petsc_grayscott_multiimplicit attribute) (piline attribute) (polynomial_testequation attribute) (Problem attribute) (ProtheroRobinson attribute) (ProtheroRobinsonAutonomous attribute) (Quench attribute) (RayleighBenard attribute) (swfw_scalar attribute) (testequation0d attribute) (vanderpol attribute) dump_setup() (Controller method) dw (allencahn_temp_imex attribute) Dx (acoustic_1d_imex attribute) dx (acoustic_1d_imex attribute) (allencahn2d_imex attribute), [1] (allencahn2d_imex_stab attribute), [1] (allencahn_front_fullyimplicit attribute) (allencahn_fullyimplicit attribute), [1] (allencahn_imex attribute) (allencahn_periodic_fullyimplicit attribute) (allencahn_temp_imex attribute) (fermi_pasta_ulam_tsingou attribute) (generalized_fisher attribute) (GenericNDimFinDiff property) (heat2d_petsc_forced attribute) (petsc_fisher_multiimplicit attribute) (petsc_grayscott_multiimplicit attribute) (Quench attribute) dy (allencahn_imex attribute) (allencahn_temp_imex attribute) (heat2d_petsc_forced attribute) (petsc_grayscott_multiimplicit attribute)

E

EDIRK4 (class in implementations.sweeper_classes.Runge_Kutta) elec (fields attribute) Entry (class in core.hooks) entry (Hooks attribute), [1] eps (allencahn_temp_imex attribute) ESDIRK43 (class in implementations.sweeper_classes.Runge_Kutta) ESDIRK53 (class in implementations.sweeper_classes.Runge_Kutta) estimate_embedded_error_serial() (EstimateEmbeddedError method) EstimateContractionFactor (class in implementations.convergence_controller_classes.estimate_contraction_factor) EstimateEmbeddedError (class in implementations.convergence_controller_classes.estimate_embedded_error) EstimateEmbeddedErrorCollocation (class in implementations.convergence_controller_classes.estimate_embedded_error) EstimateEmbeddedErrorLinearizedMPI (class in implementations.convergence_controller_classes.estimate_embedded_error) EstimateEmbeddedErrorLinearizedNonMPI (class in implementations.convergence_controller_classes.estimate_embedded_error) EstimateExtrapolationErrorBase (class in implementations.convergence_controller_classes.estimate_extrapolation_error) EstimateExtrapolationErrorNonMPI (class in implementations.convergence_controller_classes.estimate_extrapolation_error) EstimateExtrapolationErrorWithinQ (class in implementations.convergence_controller_classes.estimate_extrapolation_error) EstimatePolynomialError (class in implementations.convergence_controller_classes.estimate_polynomial_error) eval_f() (acoustic_1d_imex method) (advectiondiffusion1d_imex method) (advectiondiffusion1d_implicit method) (allencahn2d_imex method), [1] (allencahn2d_imex_stab method), [1] (allencahn_front_finel method) (allencahn_front_fullyimplicit method) (allencahn_front_semiimplicit method) (allencahn_fullyimplicit method), [1] (allencahn_imex method) (allencahn_imex_timeforcing method) (allencahn_multiimplicit method), [1] (allencahn_multiimplicit_v2 method), [1] (allencahn_periodic_fullyimplicit method) (allencahn_periodic_multiimplicit method) (allencahn_periodic_semiimplicit method) (allencahn_semiimplicit method), [1] (allencahn_semiimplicit_v2 method), [1] (allencahn_temp_imex method) (auzinger method) (battery method) (battery_implicit method) (battery_n_capacitors method) (boussinesq_2d_imex method) (Brusselator method) (buck_converter method) (Burgers1D method) (Burgers2D method) (ChemicalReaction3Var method) (DiscontinuousTestODE method) (ExactDiscontinuousTestODE method) (fenics_grayscott method) (fenics_heat method) (fenics_heat_mass method) (fenics_vortex_2d method) (fenics_vortex_2d_mass method) (fermi_pasta_ulam_tsingou method) (generalized_fisher method) (GenericNDimFinDiff method) (grayscott_imex_diffusion method) (grayscott_imex_linear method) (grayscott_mi_diffusion method) (grayscott_mi_linear method) (harmonic_oscillator method) (Heat1DChebychev method) (Heat1DUltraspherical method) (heat2d_petsc_forced method) (Heat2DChebychev method) (Heat2DUltraspherical method) (heatNd_forced method), [1] (heatNd_unforced method) (henon_heiles method) (IMEX_Laplacian_MPIFFT method) (JacobiElliptic method) (Kaps method) (logistics_equation method) (LorenzAttractor method) (nonlinear_ODE_1 method) (nonlinearschroedinger_fully_implicit method) (outer_solar_system method) (penningtrap method) (petsc_fisher_fullyimplicit method) (petsc_fisher_multiimplicit method) (petsc_fisher_semiimplicit method) (petsc_grayscott_fullyimplicit method) (petsc_grayscott_multiimplicit method) (petsc_grayscott_semiimplicit method) (piline method) (polynomial_testequation method) (polynomial_testequation_IMEX method) (Problem method) (ProtheroRobinson method) (ProtheroRobinsonAutonomous method) (Quench method) (QuenchIMEX method) (RayleighBenard method) (swfw_scalar method) (testequation0d method) (vanderpol method)

eval_f_non_linear() (Quench method) eval_hamiltonian() (fermi_pasta_ulam_tsingou method) (harmonic_oscillator method) (henon_heiles method) (outer_solar_system method) eval_mode_energy() (fermi_pasta_ulam_tsingou method) evaluate() (CollBase static method) ExactDiscontinuousTestODE (class in implementations.problem_classes.DiscontinuousTestODE) expl (petsc_vec_comp2 attribute) (petsc_vec_imex attribute) (rhs_fenics_mesh attribute) explicit (class in implementations.sweeper_classes.explicit) ExplicitMidpointMethod (class in implementations.sweeper_classes.Runge_Kutta)

F

F (fenics_grayscott attribute) f (Level attribute) F (petsc_fisher_multiimplicit attribute) f() (bdf2 method) (dirk method), [1] (ProtheroRobinson method) (ProtheroRobinsonAutonomous method) (trapezoidal method) F1 (fenics_grayscott attribute) F2 (fenics_grayscott attribute) f_fast() (rk_imex method), [1] (SplitExplicit method) f_fast_solve() (rk_imex method), [1] f_fastMom() (SplitExplicit method) f_fastTher() (SplitExplicit method) f_init (Problem property) f_LIN() (ProtheroRobinson method) (ProtheroRobinsonAutonomous method) f_NONLIN() (ProtheroRobinson method) (ProtheroRobinsonAutonomous method) f_slow() (rk_imex method), [1] (SplitExplicit method) f_solve() (bdf2 method) (dirk method), [1] (trapezoidal method) fast_interactions() (penningtrap static method) fenics_grayscott (class in implementations.problem_classes.GrayScott_1D_FEniCS_implicit) fenics_heat (class in implementations.problem_classes.HeatEquation_1D_FEniCS_matrix_forced) fenics_heat_mass (class in implementations.problem_classes.HeatEquation_1D_FEniCS_matrix_forced) fenics_heat_mass_timebc (class in implementations.problem_classes.HeatEquation_1D_FEniCS_matrix_forced) fenics_mesh (class in implementations.datatype_classes.fenics_mesh) fenics_vortex_2d (class in implementations.problem_classes.VorticityVelocity_2D_FEniCS_periodic) fenics_vortex_2d_mass (class in implementations.problem_classes.VorticityVelocity_2D_FEniCS_periodic) fermi_pasta_ulam_tsingou (class in implementations.problem_classes.FermiPastaUlamTsingou) fft (allencahn_imex attribute) (allencahn_temp_imex attribute) (grayscott_imex_diffusion attribute) (grayscott_mi_diffusion attribute) (IMEX_Laplacian_MPIFFT attribute) (nonlinearschroedinger_imex attribute)

fft_backend (IMEX_Laplacian_MPIFFT attribute) (SpectralHelper attribute) fft_cache (SpectralHelper attribute) fft_comm_backend (IMEX_Laplacian_MPIFFT attribute) (SpectralHelper attribute) fft_lib (SpectralHelper attribute) (SpectralHelper1D attribute) fft_obj (SpectralHelper attribute) fft_to_fft (class in implementations.transfer_classes.TransferMesh_MPIFFT) FFTHelper (class in helpers.spectral_helper) fields (class in implementations.datatype_classes.particles) fields.electric (class in implementations.datatype_classes.particles) fields.magnetic (class in implementations.datatype_classes.particles) figsize() (in module helpers.plot_helper) figsize_by_journal() (in module helpers.plot_helper) filter_stats() (in module helpers.stats_helper) fine (base_transfer_mass attribute) (base_transfer_MPI attribute) (BaseTransfer attribute) fine_prob (SpaceTransfer attribute) firsttimestep() (bdf2 method), [1] Fisher_full (class in implementations.problem_classes.GeneralizedFisher_1D_PETSc) Fisher_reaction (class in implementations.problem_classes.GeneralizedFisher_1D_PETSc) fix_bc_for_residual (fenics_heat_mass attribute) (fenics_heat_mass_timebc attribute) fix_residual() (fenics_heat_mass method) fold (Level attribute) formFunction() (Fisher_full method) (Fisher_reaction method) (GS_full method) (GS_reaction method) formJacobian() (Fisher_full method) (Fisher_reaction method) (GS_full method) (GS_reaction method) ForwardEuler (class in implementations.sweeper_classes.Runge_Kutta) FrozenClass (class in helpers.pysdc_helper) full_BCs (SpectralHelper attribute) full_solar_system (class in implementations.problem_classes.FullSolarSystem)

G

g (fenics_heat attribute) (fenics_heat_mass attribute) (fenics_heat_mass_timebc attribute) G (full_solar_system attribute) (outer_solar_system attribute), [1] g() (ProtheroRobinson method) (ProtheroRobinsonAutonomous method) generalized_fisher (class in implementations.problem_classes.GeneralizedFisher_1D_FD_implicit) generate_description() (in module helpers.setup_helper) generate_scipy_reference_solution() (Problem method) generate_starting_values() (AdamsMoultonImplicit2Step method) (MultiStep method) generator (ARK324L2SAERK attribute) (ARK324L2SAESDIRK attribute) (ARK548L2SAERK attribute) (ARK548L2SAESDIRK2 attribute) (BackwardEuler attribute) (Cash_Karp attribute) (CrankNicolson attribute) (DIRK43 attribute) (DIRK43_2 attribute) (EDIRK4 attribute) (ESDIRK43 attribute) (ESDIRK53 attribute) (ExplicitMidpointMethod attribute) (ForwardEuler attribute) (Heun_Euler attribute) (ImplicitMidpointMethod attribute) (RK4 attribute) generator_EXP (ARK2 attribute) (ARK3 attribute) (ARK548L2SAERK2 attribute) generator_IMP (ARK2 attribute) (ARK3 attribute) (ARK548L2SAESDIRK attribute) generic_implicit (class in implementations.sweeper_classes.generic_implicit) generic_implicit_MPI (class in implementations.sweeper_classes.generic_implicit_MPI) GenericNDimFinDiff (class in implementations.problem_classes.generic_ND_FD) GenericSpectralLinear (class in implementations.problem_classes.generic_spectral) get() (FrozenClass method) get2DMatrix() (in module implementations.problem_classes.boussinesq_helpers.build2DFDMatrix) get2DMesh() (in module implementations.problem_classes.boussinesq_helpers.build2DFDMatrix) get2DUpwindMatrix() (in module implementations.problem_classes.boussinesq_helpers.build2DFDMatrix) get_1d_grid() (in module helpers.problem_helper) get_1dgrid() (ChebychevHelper method) (FFTHelper method) (SpectralHelper1D method) get_aligned() (SpectralHelper method) get_basis_change_matrix() (ChebychevHelper method) (SpectralHelper method) (SpectralHelper1D method) (UltrasphericalHelper method) get_BC() (ChebychevHelper method) (FFTHelper method) (SpectralHelper method) (SpectralHelper1D method) get_Butcher_tableau() (RungeKutta class method) get_Butcher_tableau_bar() (RungeKuttaNystrom class method) get_Butcher_tableau_explicit() (RungeKuttaIMEX class method) get_conv() (ChebychevHelper method) get_convergence() (AdaptivityCollocation method) (AdaptivityExtrapolationWithinQ method) (AdaptivityForConvergedCollocationProblems method) (AdaptivityPolynomialError method) get_convergence_controllers_as_table() (Controller method) get_count() (NCCLComm static method) get_default_sweeper_class() (GenericNDimFinDiff class method) (Problem class method) get_differentiation_matrix() (ChebychevHelper method) (FFTHelper method) (SpectralHelper method) (SpectralHelper1D method) (UltrasphericalHelper method) get_Dirichlet_BC_row() (ChebychevHelper method) get_Dirichlet_recombination_matrix() (ChebychevHelper method) (SpectralHelper method) get_dtype() (NCCLComm static method) get_empty_operator_matrix() (SpectralHelper method) (SpectralHelper1D method) get_extrapolated_error() (EstimateExtrapolationErrorNonMPI method) get_extrapolated_error_DAE() (in module implementations.problem_classes.generic_spectral) get_extrapolated_solution() (EstimateExtrapolationErrorNonMPI method) get_extrapolation_coefficients() (EstimateExtrapolationErrorBase method) get_fft() (SpectralHelper method) get_fft_shift() (ChebychevHelper method) get_fft_shuffle() (ChebychevHelper method) get_fft_utils() (ChebychevHelper method) get_fig() (Brusselator method) (Burgers1D method) (Burgers2D method) (grayscott_imex_diffusion method) (Problem method) (RayleighBenard method) get_filter_matrix() (SpectralHelper method) (SpectralHelper1D method) get_finite_difference_matrix() (in module helpers.problem_helper) get_finite_difference_stencil() (in module helpers.problem_helper) get_full_f() (RungeKutta method) (RungeKuttaNystrom method) get_grid() (SpectralHelper method) get_Id() (SpectralHelper method) (SpectralHelper1D method) get_implementation() (BasicRestarting class method) (EstimateEmbeddedError class method) (SpreadStepSizesBlockwise class method)

get_integ_BC_row() (ChebychevHelper method) (FFTHelper method) get_integration_constant() (UltrasphericalHelper method) get_integration_matrix() (ChebychevHelper method) (FFTHelper method) (SpectralHelper method) (SpectralHelper1D method) (UltrasphericalHelper method) get_interactions() (penningtrap method) get_list_of_types() (in module helpers.stats_helper) get_local_error_estimate() (Adaptivity method) (AdaptivityBase method) (AdaptivityCollocation method) (AdaptivityExtrapolationWithinQ method) (AdaptivityPolynomialError method) (AdaptivityResidual method) get_local_slice_of_1D_matrix() (SpectralHelper method) get_new_step_size() (Adaptivity method) (AdaptivityBase method) (AdaptivityCollocation method) (AdaptivityExtrapolationWithinQ method) (AdaptivityPolynomialError method) (AdaptivityResidual method) (AdaptivityRK method) (CFLLimit method) (ConvergenceController method) (StepSizeLimiter method) (StepSizeRounding method) (StepSizeSlopeLimiter method) get_non_linear_Jacobian() (Quench method) get_norm() (ChebychevHelper method) get_Nyquist_mode_index() (FFTHelper method) get_op() (NCCLComm method) get_problem_dict() (battery_n_capacitors method) get_Q_matrix() (RungeKutta class method) get_Qdelta_explicit() (Sweeper method) get_Qdelta_implicit() (Sweeper method) get_S() (UltrasphericalHelper method) get_scalar_problems_manysweep_mat() (imex_1st_order method) get_scalar_problems_manysweep_mats() (boris_2nd_order method) get_scalar_problems_picardsweep_mats() (boris_2nd_order method) get_scalar_problems_sweeper_mats() (boris_2nd_order method) (imex_1st_order method) get_sorted() (in module helpers.stats_helper) get_step_from_which_to_spread() (SpreadStepSizesBlockwise method) (SpreadStepSizesBlockwiseMPI method) (SpreadStepSizesBlockwiseNonMPI method) get_steps() (in module helpers.problem_helper) get_sweeper_mats() (boris_2nd_order method) (imex_1st_order method) get_switching_info() (battery_n_capacitors method) (DiscontinuousTestODE method) get_sys_mat() (petsc_fisher_multiimplicit method) get_transfer_matrix_Q() (BaseTransfer static method) get_update_order() (ARK32 class method) (ARK324L2SAERK class method) (ARK54 class method) (ARK548L2SA class method) (ARK548L2SAERK class method) (ARK548L2SAESDIRK2 class method) (Cash_Karp class method) (DIRK43 class method) (ESDIRK43 class method) (ESDIRK53 class method) (Heun_Euler class method) (RungeKutta class method) get_wavenumbers() (ChebychevHelper method) (FFTHelper method) (SpectralHelper method) (SpectralHelper1D method) get_zero() (SpectralHelper1D method) getBCHorizontal() (in module implementations.problem_classes.boussinesq_helpers.build2DFDMatrix) getBCLeft() (in module implementations.problem_classes.acoustic_helpers.buildFDMatrix) (in module implementations.problem_classes.boussinesq_helpers.buildFDMatrix) getBCRight() (in module implementations.problem_classes.acoustic_helpers.buildFDMatrix) (in module implementations.problem_classes.boussinesq_helpers.buildFDMatrix) getBCVertical() (in module implementations.problem_classes.boussinesq_helpers.build2DFDMatrix) getBoussinesq2DMatrix() (in module implementations.problem_classes.boussinesq_helpers.buildBoussinesq2DMatrix) getBoussinesq2DUpwindMatrix() (in module implementations.problem_classes.boussinesq_helpers.buildBoussinesq2DMatrix) getBoussinesqBCHorizontal() (in module implementations.problem_classes.boussinesq_helpers.buildBoussinesq2DMatrix) getBoussinesqBCVertical() (in module implementations.problem_classes.boussinesq_helpers.buildBoussinesq2DMatrix) getcounter() (Callback method) getHorizontalDx() (in module implementations.problem_classes.acoustic_helpers.buildFDMatrix) getLaplacian() (IMEX_Laplacian_MPIFFT method) getLocalGrid() (IMEX_Laplacian_MPIFFT method) getMatrix() (in module implementations.problem_classes.acoustic_helpers.buildFDMatrix) (in module implementations.problem_classes.boussinesq_helpers.buildFDMatrix) getresidual() (Callback method) getUpwindMatrix() (in module implementations.problem_classes.boussinesq_helpers.buildFDMatrix) getWave1DAdvectionMatrix() (in module implementations.problem_classes.acoustic_helpers.buildWave1DMatrix) getWave1DMatrix() (in module implementations.problem_classes.acoustic_helpers.buildWave1DMatrix) getWaveBCLeft() (in module implementations.problem_classes.acoustic_helpers.buildWave1DMatrix) getWaveBCRight() (in module implementations.problem_classes.acoustic_helpers.buildWave1DMatrix) global_shape (SpectralHelper attribute) globally_stiffly_accurate (ButcherTableau property) (ButcherTableauEmbedded property) gmres_logger (boussinesq_2d_imex attribute) grayscott_imex_diffusion (class in implementations.problem_classes.GrayScott_MPIFFT) grayscott_imex_linear (class in implementations.problem_classes.GrayScott_MPIFFT) grayscott_mi_diffusion (class in implementations.problem_classes.GrayScott_MPIFFT) grayscott_mi_linear (class in implementations.problem_classes.GrayScott_MPIFFT) grids (GenericNDimFinDiff property) GS_full (class in implementations.problem_classes.GrayScott_2D_PETSc_periodic) GS_reaction (class in implementations.problem_classes.GrayScott_2D_PETSc_periodic)

H

h (boussinesq_2d_imex attribute) harmonic_oscillator (class in implementations.problem_classes.HarmonicOscillator) Heat1DChebychev (class in implementations.problem_classes.HeatEquation_Chebychev) Heat1DUltraspherical (class in implementations.problem_classes.HeatEquation_Chebychev) heat2d_petsc_forced (class in implementations.problem_classes.HeatEquation_2D_PETSc_forced) Heat2DChebychev (class in implementations.problem_classes.HeatEquation_Chebychev) Heat2DUltraspherical (class in implementations.problem_classes.HeatEquation_Chebychev) heatNd_forced (class in implementations.problem_classes.HeatEquation_ND_FD) (class in implementations.problem_classes.HeatEquation_ND_FD_CuPy) heatNd_unforced (class in implementations.problem_classes.HeatEquation_ND_FD) (class in implementations.problem_classes.HeatEquation_ND_FD_CuPy) helpers module helpers.NCCL_communicator module helpers.plot_helper module helpers.problem_helper module

helpers.pysdc_helper module helpers.setup_helper module helpers.spectral_helper module helpers.stats_helper module helpers.testing module helpers.transfer_helper module helpers.visualization_tools module henon_heiles (class in implementations.problem_classes.HenonHeiles) Heun_Euler (class in implementations.sweeper_classes.Runge_Kutta) Hooks (class in core.hooks) hooks (Controller property) HotRod (class in implementations.convergence_controller_classes.hotrod)

I

Id (acoustic_1d_imex attribute) (advectionNd attribute) (boussinesq_2d_imex attribute) (GenericNDimFinDiff attribute) (heat2d_petsc_forced attribute) (heatNd_forced attribute) (heatNd_unforced attribute) (petsc_grayscott_multiimplicit attribute) (Quench attribute) imex_1st_order (class in implementations.sweeper_classes.imex_1st_order) imex_1st_order_mass (class in implementations.sweeper_classes.imex_1st_order_mass) imex_1st_order_MPI (class in implementations.sweeper_classes.imex_1st_order_MPI) imex_cupy_mesh (class in implementations.datatype_classes.cupy_mesh) IMEX_Laplacian_MPIFFT (class in implementations.problem_classes.generic_MPIFFT_Laplacian) imex_mesh (class in implementations.datatype_classes.mesh) IMEXEuler (class in implementations.sweeper_classes.Runge_Kutta) impl (petsc_vec_comp2 attribute) (petsc_vec_imex attribute) (rhs_fenics_mesh attribute) implementations module implementations.controller_classes module implementations.controller_classes.controller_MPI module implementations.controller_classes.controller_nonMPI module implementations.convergence_controller_classes module implementations.convergence_controller_classes.adaptive_collocation module implementations.convergence_controller_classes.adaptivity module implementations.convergence_controller_classes.basic_restarting module implementations.convergence_controller_classes.check_convergence module implementations.convergence_controller_classes.check_iteration_estimator module implementations.convergence_controller_classes.crash module implementations.convergence_controller_classes.estimate_contraction_factor module implementations.convergence_controller_classes.estimate_embedded_error module implementations.convergence_controller_classes.estimate_extrapolation_error module implementations.convergence_controller_classes.estimate_polynomial_error module implementations.convergence_controller_classes.hotrod module implementations.convergence_controller_classes.inexactness module implementations.convergence_controller_classes.interpolate_between_restarts module implementations.convergence_controller_classes.spread_step_sizes module implementations.convergence_controller_classes.step_size_limiter module implementations.convergence_controller_classes.store_uold module implementations.datatype_classes module implementations.datatype_classes.cupy_mesh module implementations.datatype_classes.fenics_mesh module implementations.datatype_classes.mesh module implementations.datatype_classes.particles module implementations.datatype_classes.petsc_vec module implementations.problem_classes module implementations.problem_classes.acoustic_helpers module implementations.problem_classes.acoustic_helpers.buildFDMatrix module implementations.problem_classes.acoustic_helpers.buildWave1DMatrix module implementations.problem_classes.acoustic_helpers.standard_integrators module implementations.problem_classes.AcousticAdvection_1D_FD_imex module implementations.problem_classes.AdvectionDiffusionEquation_1D_FFT module implementations.problem_classes.AdvectionEquation_ND_FD module implementations.problem_classes.AllenCahn_1D_FD module implementations.problem_classes.AllenCahn_2D_FD module implementations.problem_classes.AllenCahn_2D_FD_gpu module implementations.problem_classes.AllenCahn_2D_FFT module implementations.problem_classes.AllenCahn_2D_FFT_gpu module implementations.problem_classes.AllenCahn_MPIFFT module implementations.problem_classes.AllenCahn_Temp_MPIFFT module implementations.problem_classes.Auzinger_implicit module implementations.problem_classes.Battery module implementations.problem_classes.Boussinesq_2D_FD_imex module implementations.problem_classes.boussinesq_helpers module implementations.problem_classes.boussinesq_helpers.build2DFDMatrix module implementations.problem_classes.boussinesq_helpers.buildBoussinesq2DMatrix module implementations.problem_classes.boussinesq_helpers.buildFDMatrix module implementations.problem_classes.boussinesq_helpers.helper_classes module implementations.problem_classes.boussinesq_helpers.standard_integrators module implementations.problem_classes.boussinesq_helpers.unflatten module implementations.problem_classes.Brusselator module implementations.problem_classes.BuckConverter module implementations.problem_classes.Burgers module implementations.problem_classes.DiscontinuousTestODE module implementations.problem_classes.FastWaveSlowWave_0D module implementations.problem_classes.FermiPastaUlamTsingou module implementations.problem_classes.FullSolarSystem module implementations.problem_classes.GeneralizedFisher_1D_FD_implicit module implementations.problem_classes.GeneralizedFisher_1D_PETSc module implementations.problem_classes.generic_MPIFFT_Laplacian module implementations.problem_classes.generic_ND_FD module

implementations.problem_classes.generic_spectral module implementations.problem_classes.GrayScott_1D_FEniCS_implicit module implementations.problem_classes.GrayScott_2D_PETSc_periodic module implementations.problem_classes.GrayScott_MPIFFT module implementations.problem_classes.HarmonicOscillator module implementations.problem_classes.HeatEquation_1D_FEniCS_matrix_forced module implementations.problem_classes.HeatEquation_2D_PETSc_forced module implementations.problem_classes.HeatEquation_Chebychev module implementations.problem_classes.HeatEquation_ND_FD module implementations.problem_classes.HeatEquation_ND_FD_CuPy module implementations.problem_classes.HenonHeiles module implementations.problem_classes.LogisticEquation module implementations.problem_classes.Lorenz module implementations.problem_classes.nonlinear_ODE_1 module implementations.problem_classes.NonlinearSchroedinger_MPIFFT module implementations.problem_classes.odeScalar module implementations.problem_classes.odeSystem module implementations.problem_classes.OuterSolarSystem module implementations.problem_classes.PenningTrap_3D module implementations.problem_classes.Piline module implementations.problem_classes.polynomial_test_problem module implementations.problem_classes.Quench module implementations.problem_classes.RayleighBenard module implementations.problem_classes.TestEquation_0D module implementations.problem_classes.Van_der_Pol_implicit module implementations.problem_classes.VorticityVelocity_2D_FEniCS_periodic module implementations.sweeper_classes module implementations.sweeper_classes.boris_2nd_order module implementations.sweeper_classes.explicit module implementations.sweeper_classes.generic_implicit module implementations.sweeper_classes.generic_implicit_MPI module implementations.sweeper_classes.imex_1st_order module implementations.sweeper_classes.imex_1st_order_mass module implementations.sweeper_classes.imex_1st_order_MPI module implementations.sweeper_classes.multi_implicit module implementations.sweeper_classes.Multistep module implementations.sweeper_classes.Runge_Kutta module implementations.sweeper_classes.Runge_Kutta_Nystrom module implementations.sweeper_classes.verlet module implementations.transfer_classes module implementations.transfer_classes.BaseTransfer_mass module implementations.transfer_classes.BaseTransferMPI module implementations.transfer_classes.TransferFenicsMesh module implementations.transfer_classes.TransferMesh module implementations.transfer_classes.TransferMesh_FFT module implementations.transfer_classes.TransferMesh_FFT2D module implementations.transfer_classes.TransferMesh_MPIFFT module implementations.transfer_classes.TransferMesh_NoCoarse module implementations.transfer_classes.TransferParticles_NoCoarse module implementations.transfer_classes.TransferPETScDMDA module ImplicitMidpointMethod (class in implementations.sweeper_classes.Runge_Kutta) increment_stats() (Hooks method) index() (SpectralHelper method) init (SpectralHelper attribute) init_forward (SpectralHelper attribute) init_step() (Step method) init_type (allencahn_temp_imex attribute) integrate() (boris_2nd_order method) (explicit method) (generic_implicit method) (generic_implicit_MPI method) (imex_1st_order method) (imex_1st_order_MPI method) (multi_implicit method) (RungeKutta method) (RungeKuttaIMEX method) (Sweeper method) (verlet method) InterpolateBetweenRestarts (class in implementations.convergence_controller_classes.interpolate_between_restarts) interpolation_matrix_1d() (in module helpers.transfer_helper) irecv() (cupy_mesh method) (mesh method) (petsc_vec method) irfft_object_fine (mesh_to_mesh_fft attribute) isend() (cupy_mesh method) (mesh method) (particles method) (petsc_vec method) it_check() (controller_MPI method) (controller_nonMPI method) it_coarse() (controller_MPI method) (controller_nonMPI method) it_down() (controller_MPI method) (controller_nonMPI method) it_fine() (controller_MPI method) (controller_nonMPI method) it_up() (controller_MPI method) (controller_nonMPI method) iter (Entry attribute) itransform() (ChebychevHelper method) (FFTHelper method) (SpectralHelper method) itransform_single_component() (SpectralHelper method)

J

J (petsc_fisher_multiimplicit attribute) jac() (ProtheroRobinson method)

jac_LIN() (ProtheroRobinson method) jac_NONLIN() (ProtheroRobinson method) JacobiElliptic (class in implementations.problem_classes.odeSystem)

K

K (fenics_heat attribute) (fenics_heat_mass attribute) (fenics_heat_mass_timebc attribute) (fenics_vortex_2d attribute) (fenics_vortex_2d_mass attribute) K2 (allencahn_imex attribute) (allencahn_temp_imex attribute) (IMEX_Laplacian_MPIFFT attribute) (nonlinearschroedinger_imex attribute)

Kaps (class in implementations.problem_classes.odeSystem) ksp (heat2d_petsc_forced attribute) (petsc_fisher_multiimplicit attribute) (petsc_grayscott_multiimplicit attribute) ksp_itercount (heat2d_petsc_forced attribute) ksp_ncalls (heat2d_petsc_forced attribute) Ku (grayscott_imex_diffusion attribute) (grayscott_mi_diffusion attribute) Kv (grayscott_imex_diffusion attribute) (grayscott_mi_diffusion attribute)

L

L (allencahn_temp_imex attribute) (GenericSpectralLinear attribute) (SpectralHelper1D attribute) lap (advectiondiffusion1d_imex attribute) (allencahn2d_imex attribute), [1] (allencahn2d_imex_stab attribute), [1] leak (Quench attribute) left_is_node (CollBase attribute) Level (class in core.level) level (Entry attribute) (RungeKutta property) (Sweeper property) level_index (Level attribute) levels (Step attribute) lin_itercount (allencahn_fullyimplicit attribute), [1] lin_ncalls (allencahn_fullyimplicit attribute), [1] linalg (SpectralHelper attribute) (SpectralHelper1D attribute) local_slice (SpectralHelper attribute)

localX (Fisher_full attribute) (Fisher_reaction attribute) (GS_full attribute) (GS_reaction attribute) (petsc_fisher_multiimplicit attribute) (petsc_grayscott_multiimplicit attribute) log() (ConvergenceController method) LogAnalysisVariables (class in implementations.problem_classes.RayleighBenard) LogCFL (class in implementations.problem_classes.RayleighBenard) logger (base_transfer_mass attribute) (base_transfer_MPI attribute) (BaseTransfer attribute) (Hooks attribute) (Problem attribute), [1] (SpaceTransfer attribute) (Step attribute) (Sweeper attribute) logging (class in implementations.problem_classes.boussinesq_helpers.helper_classes) logistics_equation (class in implementations.problem_classes.LogisticEquation) LorenzAttractor (class in implementations.problem_classes.Lorenz)

M

M (boussinesq_2d_imex attribute) (fenics_grayscott attribute) (fenics_heat attribute) (fenics_heat_mass attribute) (fenics_heat_mass_timebc attribute) (fenics_vortex_2d attribute) (fenics_vortex_2d_mass attribute) (GenericSpectralLinear attribute) magn (fields attribute) matmul() (AdaptiveCollocation method) (EstimatePolynomialError method) matrix (ARK2 attribute) (ARK3 attribute) (ARK32 attribute) (ARK324L2SAERK attribute) (ARK324L2SAESDIRK attribute) (ARK54 attribute) (ARK548L2SA attribute) (ARK548L2SAERK attribute) (ARK548L2SAERK2 attribute) (ARK548L2SAESDIRK attribute) (ARK548L2SAESDIRK2 attribute) (BackwardEuler attribute) (Cash_Karp attribute) (CrankNicolson attribute) (DIRK43 attribute) (DIRK43_2 attribute) (EDIRK4 attribute) (ESDIRK43 attribute) (ESDIRK53 attribute) (ExplicitMidpointMethod attribute) (ForwardEuler attribute) (Heun_Euler attribute) (IMEXEuler attribute) (ImplicitMidpointMethod attribute) (RK4 attribute) (RKN attribute) (RungeKutta attribute) (Velocity_Verlet attribute) matrix_bar (RKN attribute) (RungeKuttaNystrom attribute) (Velocity_Verlet attribute) matrix_explicit (ARK2 attribute) (ARK3 attribute) (ARK32 attribute) (ARK54 attribute) (ARK548L2SA attribute) (IMEXEuler attribute) (RungeKuttaIMEX attribute) mesh (acoustic_1d_imex attribute) (class in implementations.datatype_classes.mesh) mesh_to_mesh (class in implementations.transfer_classes.TransferMesh) (class in implementations.transfer_classes.TransferMesh_NoCoarse) mesh_to_mesh_fenics (class in implementations.transfer_classes.TransferFenicsMesh) mesh_to_mesh_fft (class in implementations.transfer_classes.TransferMesh_FFT) mesh_to_mesh_fft2d (class in implementations.transfer_classes.TransferMesh_FFT2D) mesh_to_mesh_petsc_dmda (class in implementations.transfer_classes.TransferPETScDMDA) meta_data (Hooks attribute) module core core.base_transfer core.collocation core.common core.controller core.convergence_controller core.errors core.hooks core.level core.problem core.space_transfer core.step core.sweeper helpers helpers.NCCL_communicator helpers.plot_helper helpers.problem_helper helpers.pysdc_helper helpers.setup_helper helpers.spectral_helper helpers.stats_helper helpers.testing helpers.transfer_helper helpers.visualization_tools implementations implementations.controller_classes implementations.controller_classes.controller_MPI implementations.controller_classes.controller_nonMPI implementations.convergence_controller_classes implementations.convergence_controller_classes.adaptive_collocation implementations.convergence_controller_classes.adaptivity implementations.convergence_controller_classes.basic_restarting implementations.convergence_controller_classes.check_convergence implementations.convergence_controller_classes.check_iteration_estimator implementations.convergence_controller_classes.crash implementations.convergence_controller_classes.estimate_contraction_factor implementations.convergence_controller_classes.estimate_embedded_error implementations.convergence_controller_classes.estimate_extrapolation_error implementations.convergence_controller_classes.estimate_polynomial_error implementations.convergence_controller_classes.hotrod implementations.convergence_controller_classes.inexactness implementations.convergence_controller_classes.interpolate_between_restarts implementations.convergence_controller_classes.spread_step_sizes implementations.convergence_controller_classes.step_size_limiter implementations.convergence_controller_classes.store_uold implementations.datatype_classes implementations.datatype_classes.cupy_mesh implementations.datatype_classes.fenics_mesh implementations.datatype_classes.mesh implementations.datatype_classes.particles implementations.datatype_classes.petsc_vec implementations.problem_classes implementations.problem_classes.acoustic_helpers implementations.problem_classes.acoustic_helpers.buildFDMatrix implementations.problem_classes.acoustic_helpers.buildWave1DMatrix implementations.problem_classes.acoustic_helpers.standard_integrators implementations.problem_classes.AcousticAdvection_1D_FD_imex implementations.problem_classes.AdvectionDiffusionEquation_1D_FFT implementations.problem_classes.AdvectionEquation_ND_FD implementations.problem_classes.AllenCahn_1D_FD implementations.problem_classes.AllenCahn_2D_FD implementations.problem_classes.AllenCahn_2D_FD_gpu implementations.problem_classes.AllenCahn_2D_FFT implementations.problem_classes.AllenCahn_2D_FFT_gpu implementations.problem_classes.AllenCahn_MPIFFT implementations.problem_classes.AllenCahn_Temp_MPIFFT implementations.problem_classes.Auzinger_implicit implementations.problem_classes.Battery implementations.problem_classes.Boussinesq_2D_FD_imex implementations.problem_classes.boussinesq_helpers implementations.problem_classes.boussinesq_helpers.build2DFDMatrix implementations.problem_classes.boussinesq_helpers.buildBoussinesq2DMatrix implementations.problem_classes.boussinesq_helpers.buildFDMatrix implementations.problem_classes.boussinesq_helpers.helper_classes implementations.problem_classes.boussinesq_helpers.standard_integrators implementations.problem_classes.boussinesq_helpers.unflatten implementations.problem_classes.Brusselator implementations.problem_classes.BuckConverter implementations.problem_classes.Burgers implementations.problem_classes.DiscontinuousTestODE implementations.problem_classes.FastWaveSlowWave_0D implementations.problem_classes.FermiPastaUlamTsingou implementations.problem_classes.FullSolarSystem implementations.problem_classes.GeneralizedFisher_1D_FD_implicit implementations.problem_classes.GeneralizedFisher_1D_PETSc implementations.problem_classes.generic_MPIFFT_Laplacian implementations.problem_classes.generic_ND_FD implementations.problem_classes.generic_spectral implementations.problem_classes.GrayScott_1D_FEniCS_implicit implementations.problem_classes.GrayScott_2D_PETSc_periodic implementations.problem_classes.GrayScott_MPIFFT implementations.problem_classes.HarmonicOscillator implementations.problem_classes.HeatEquation_1D_FEniCS_matrix_forced implementations.problem_classes.HeatEquation_2D_PETSc_forced implementations.problem_classes.HeatEquation_Chebychev implementations.problem_classes.HeatEquation_ND_FD implementations.problem_classes.HeatEquation_ND_FD_CuPy implementations.problem_classes.HenonHeiles implementations.problem_classes.LogisticEquation implementations.problem_classes.Lorenz implementations.problem_classes.nonlinear_ODE_1 implementations.problem_classes.NonlinearSchroedinger_MPIFFT implementations.problem_classes.odeScalar implementations.problem_classes.odeSystem implementations.problem_classes.OuterSolarSystem implementations.problem_classes.PenningTrap_3D implementations.problem_classes.Piline implementations.problem_classes.polynomial_test_problem implementations.problem_classes.Quench implementations.problem_classes.RayleighBenard implementations.problem_classes.TestEquation_0D implementations.problem_classes.Van_der_Pol_implicit implementations.problem_classes.VorticityVelocity_2D_FEniCS_periodic implementations.sweeper_classes implementations.sweeper_classes.boris_2nd_order implementations.sweeper_classes.explicit implementations.sweeper_classes.generic_implicit implementations.sweeper_classes.generic_implicit_MPI implementations.sweeper_classes.imex_1st_order implementations.sweeper_classes.imex_1st_order_mass implementations.sweeper_classes.imex_1st_order_MPI implementations.sweeper_classes.multi_implicit implementations.sweeper_classes.Multistep implementations.sweeper_classes.Runge_Kutta implementations.sweeper_classes.Runge_Kutta_Nystrom implementations.sweeper_classes.verlet implementations.transfer_classes implementations.transfer_classes.BaseTransfer_mass implementations.transfer_classes.BaseTransferMPI implementations.transfer_classes.TransferFenicsMesh implementations.transfer_classes.TransferMesh implementations.transfer_classes.TransferMesh_FFT implementations.transfer_classes.TransferMesh_FFT2D implementations.transfer_classes.TransferMesh_MPIFFT implementations.transfer_classes.TransferMesh_NoCoarse implementations.transfer_classes.TransferParticles_NoCoarse implementations.transfer_classes.TransferPETScDMDA

multi_implicit (class in implementations.sweeper_classes.multi_implicit) MultiComponentMesh (class in implementations.datatype_classes.mesh) MultiStep (class in implementations.sweeper_classes.Multistep) mx (Fisher_full attribute)

N

N (boussinesq_2d_imex attribute) (SpectralHelper1D attribute) NCCLComm (class in helpers.NCCL_communicator) ncomponents (SpectralHelper property) ndim (GenericNDimFinDiff property) (grayscott_imex_diffusion attribute) (grayscott_mi_diffusion attribute) (heatNd_forced property) (SpectralHelper property) newfig() (in module helpers.plot_helper) newton_itercount (allencahn_fullyimplicit attribute), [1] (nonlinear_ODE_1 attribute) newton_maxiter (auzinger attribute) newton_ncalls (allencahn_fullyimplicit attribute), [1] (nonlinear_ODE_1 attribute) newton_tol (auzinger attribute) NewtonInexactness (class in implementations.convergence_controller_classes.inexactness) next (Step property) next_neighbors() (in module helpers.transfer_helper) next_neighbors_periodic() (in module helpers.transfer_helper) nodes (ARK2 attribute) (ARK3 attribute) (ARK32 attribute) (ARK324L2SAERK attribute) (ARK54 attribute) (ARK548L2SA attribute) (ARK548L2SAERK attribute) (ARK548L2SAESDIRK2 attribute) (BackwardEuler attribute) (Cash_Karp attribute) (CollBase attribute) (CrankNicolson attribute) (DIRK43 attribute) (DIRK43_2 attribute) (EDIRK4 attribute) (ESDIRK43 attribute) (ESDIRK53 attribute) (ExplicitMidpointMethod attribute) (ForwardEuler attribute) (Heun_Euler attribute) (IMEXEuler attribute) (ImplicitMidpointMethod attribute) (RK4 attribute) (RKN attribute) (RungeKutta attribute) (Velocity_Verlet attribute)

nonlinear_ODE_1 (class in implementations.problem_classes.nonlinear_ODE_1) nonlinearschroedinger_fully_implicit (class in implementations.problem_classes.NonlinearSchroedinger_MPIFFT) nonlinearschroedinger_imex (class in implementations.problem_classes.NonlinearSchroedinger_MPIFFT) nswitches (battery_n_capacitors attribute) (DiscontinuousTestODE attribute) num_nodes (CollBase attribute) num_restarts (Entry attribute) NumSmallTimeSteps() (SplitExplicit method) nvars (allencahn_temp_imex attribute)

O

ones (fermi_pasta_ulam_tsingou attribute)

outer_solar_system (class in implementations.problem_classes.OuterSolarSystem)

P

ParameterError params (base_transfer_mass attribute) (base_transfer_MPI attribute) (BaseTransfer attribute) (Level attribute) (RegisterParams attribute) (RegisterParams property) (SpaceTransfer attribute) (Step attribute) (Sweeper attribute) Pars (class in core.convergence_controller) particles (class in implementations.datatype_classes.particles) particles.position (class in implementations.datatype_classes.particles) particles.velocity (class in implementations.datatype_classes.particles) particles_to_particles (class in implementations.transfer_classes.TransferParticles_NoCoarse) penningtrap (class in implementations.problem_classes.PenningTrap_3D) petsc_fisher_fullyimplicit (class in implementations.problem_classes.GeneralizedFisher_1D_PETSc) petsc_fisher_multiimplicit (class in implementations.problem_classes.GeneralizedFisher_1D_PETSc) petsc_fisher_semiimplicit (class in implementations.problem_classes.GeneralizedFisher_1D_PETSc) petsc_grayscott_fullyimplicit (class in implementations.problem_classes.GrayScott_2D_PETSc_periodic) petsc_grayscott_multiimplicit (class in implementations.problem_classes.GrayScott_2D_PETSc_periodic) petsc_grayscott_semiimplicit (class in implementations.problem_classes.GrayScott_2D_PETSc_periodic) petsc_vec (class in implementations.datatype_classes.petsc_vec) petsc_vec_comp2 (class in implementations.datatype_classes.petsc_vec) petsc_vec_imex (class in implementations.datatype_classes.petsc_vec) pfasst() (controller_MPI method) (controller_nonMPI method) piline (class in implementations.problem_classes.Piline) Pl (GenericSpectralLinear attribute) plot() (Brusselator method) (Burgers1D method) (Burgers2D method) (grayscott_imex_diffusion method) (Problem method) (RayleighBenard method) polynomial_testequation (class in implementations.problem_classes.polynomial_test_problem) polynomial_testequation_IMEX (class in implementations.problem_classes.polynomial_test_problem) pos (particles attribute) post_comm() (Hooks method) post_iteration() (Hooks method) post_iteration_processing() (AdaptiveCollocation method) (AdaptivityCollocation method) (ConvergenceController method) (EstimateContractionFactor method) (EstimateEmbeddedError method) (EstimateEmbeddedErrorCollocation method) (EstimateEmbeddedErrorLinearizedMPI method) (EstimateEmbeddedErrorLinearizedNonMPI method) (EstimateExtrapolationErrorNonMPI method) (EstimateExtrapolationErrorWithinQ method) (EstimatePolynomialError method) (HotRod method) (InterpolateBetweenRestarts method) (NewtonInexactness method) (StoreUOld method) post_predict() (Hooks method) post_run() (Hooks method) post_run_processing() (ConvergenceController method) post_setup() (Hooks method) post_spread_processing() (AdaptiveCollocation method) (ConvergenceController method) (InterpolateBetweenRestarts method) (StoreUOld method)

post_step() (Hooks method) (LogAnalysisVariables method) (LogCFL method) post_step_processing() (ConvergenceController method) post_sweep() (Hooks method) Pr (GenericSpectralLinear attribute) pre_comm() (Hooks method) pre_iteration() (Hooks method) pre_iteration_processing() (ConvergenceController method) (EstimateContractionFactor method) pre_predict() (Hooks method) pre_run() (Hooks method) pre_setup() (Hooks method) pre_step() (Hooks method) pre_sweep() (Hooks method) predict() (controller_MPI method) (controller_nonMPI method) (MultiStep method) (RungeKutta method) (RungeKuttaIMEX method) (Sweeper method) (SweeperMPI method) prepare_MPI_datatypes() (ConvergenceController method) prepare_MPI_logical_operations() (ConvergenceController method) prepare_next_block() (BasicRestartingMPI method) (BasicRestartingNonMPI method) (ConvergenceController method) (EstimateExtrapolationErrorNonMPI method) (SpreadStepSizesBlockwiseMPI method) (SpreadStepSizesBlockwiseNonMPI method) (StopAtMaxRuntime method) (StopAtNan method) prev (Step property) prob (Level property) Problem (class in core.problem) ProblemError process (Entry attribute) process_sweeper (Entry attribute) project() (mesh_to_mesh_fenics method) prolong() (base_transfer_mass method) (base_transfer_MPI method) (BaseTransfer method) (fft_to_fft method) (mesh_to_mesh method), [1] (mesh_to_mesh_fenics method) (mesh_to_mesh_fft method) (mesh_to_mesh_fft2d method) (mesh_to_mesh_petsc_dmda method) (particles_to_particles method) (SpaceTransfer method) prolong_f() (base_transfer_mass method) (base_transfer_MPI method) (BaseTransfer method) ProtheroRobinson (class in implementations.problem_classes.odeScalar) ProtheroRobinsonAutonomous (class in implementations.problem_classes.odeSystem) Pspace (mesh_to_mesh attribute), [1] (mesh_to_mesh_fft2d attribute) put_BCs_in_matrix() (SpectralHelper method) put_BCs_in_rhs() (SpectralHelper method) put_BCs_in_rhs_hat() (SpectralHelper method)

Q

Q1 (multi_implicit attribute) Q2 (multi_implicit attribute) QE (explicit attribute) (imex_1st_order attribute) QI (generic_implicit attribute) (imex_1st_order attribute)

Qmat (CollBase attribute) QQ (verlet attribute) qQ (verlet attribute) QT (verlet attribute) Quench (class in implementations.problem_classes.Quench) QuenchIMEX (class in implementations.problem_classes.Quench) Qx (verlet attribute)

R

radius (allencahn_temp_imex attribute) rank (generic_implicit_MPI attribute) (Sweeper property) (SweeperMPI property) RayleighBenard (class in implementations.problem_classes.RayleighBenard) ReadOnlyError recv() (controller_MPI method) Recv() (ConvergenceController method) recv() (ConvergenceController method) (particles method) recv_full() (controller_MPI method) (controller_nonMPI method) Reduce() (NCCLComm method) reduce() (NCCLComm method) RegisterParams (class in core.common) remove_BC() (SpectralHelper method) reset_buffers_nonMPI() (BasicRestartingNonMPI method) (CheckIterationEstimatorNonMPI method) (ConvergenceController method) (EstimateEmbeddedErrorLinearizedNonMPI method) reset_level() (Level method) reset_stats() (Hooks method) reset_status_variables() (AdaptiveCollocation method) (AdaptivityCollocation method) (BasicRestarting method) (ConvergenceController method) (EstimatePolynomialError method) reset_step() (Step method) restart_block() (controller_MPI method) (controller_nonMPI method) restrict() (base_transfer_mass method) (base_transfer_MPI method) (BaseTransfer method) (fft_to_fft method) (mesh_to_mesh method), [1] (mesh_to_mesh_fenics method) (mesh_to_mesh_fft method) (mesh_to_mesh_fft2d method) (mesh_to_mesh_petsc_dmda method) (particles_to_particles method) (SpaceTransfer method)

restriction_matrix_1d() (in module helpers.transfer_helper) return_stats() (Controller method) (Hooks method) rfft_object_coarse (mesh_to_mesh_fft attribute) rhs_BCs_hat (SpectralHelper attribute) rhs_fenics_mesh (class in implementations.datatype_classes.fenics_mesh) right_is_node (CollBase attribute) RK3Lin() (SplitExplicit method) RK4 (class in implementations.sweeper_classes.Runge_Kutta) rk_imex (class in implementations.problem_classes.acoustic_helpers.standard_integrators) (class in implementations.problem_classes.boussinesq_helpers.standard_integrators) RKN (class in implementations.sweeper_classes.Runge_Kutta_Nystrom) row (Fisher_full attribute) Rspace (mesh_to_mesh attribute), [1] (mesh_to_mesh_fft2d attribute) run() (Controller method) (controller_MPI method) (controller_nonMPI method) RungeKutta (class in implementations.sweeper_classes.Runge_Kutta) RungeKuttaIMEX (class in implementations.sweeper_classes.Runge_Kutta) RungeKuttaNystrom (class in implementations.sweeper_classes.Runge_Kutta_Nystrom)

S

S (boris_2nd_order attribute) savefig() (in module helpers.plot_helper) Send() (ConvergenceController method) send() (ConvergenceController method) (particles method) send_full() (controller_MPI method) (controller_nonMPI method) set_level_status_variable() (ConvergenceController method) set_maxiter() (NewtonInexactness method) set_step_status_variable() (ConvergenceController method) set_tolerance() (NewtonInexactness method) setup() (AdaptiveCollocation method) (Adaptivity method) (AdaptivityBase method) (AdaptivityCollocation method) (AdaptivityExtrapolationWithinQ method) (AdaptivityForConvergedCollocationProblems method) (AdaptivityPolynomialError method) (AdaptivityResidual method) (AdaptivityRK method) (BasicRestarting method) (CFLLimit method) (CheckConvergence method) (CheckIterationEstimatorNonMPI method) (ConvergenceController method) (EstimateContractionFactor method) (EstimateEmbeddedError method) (EstimateEmbeddedErrorCollocation method) (EstimateEmbeddedErrorLinearizedNonMPI method) (EstimateExtrapolationErrorBase method) (EstimateExtrapolationErrorNonMPI method) (EstimateExtrapolationErrorWithinQ method) (EstimatePolynomialError method) (HotRod method) (InterpolateBetweenRestarts method) (NewtonInexactness method) (SpreadStepSizesBlockwise method) (StepSizeLimiter method) (StepSizeRounding method) (StepSizeSlopeLimiter method) (StopAtMaxRuntime method) (StopAtNan method) (StoreUOld method) setup_BCs() (SpectralHelper method) setup_convergence_controllers() (Controller method) setup_fft() (SpectralHelper method) setup_GPU() (GenericSpectralLinear class method) (IMEX_Laplacian_MPIFFT class method) (SpectralHelper class method) (SpectralHelper1D class method) (testequation0d class method) setup_L() (GenericSpectralLinear method) setup_M() (GenericSpectralLinear method) setup_mpl() (in module helpers.plot_helper) setup_preconditioner() (GenericSpectralLinear method) setup_status_variables() (AdaptiveCollocation method) (AdaptivityCollocation method) (AdaptivityResidual method) (BasicRestarting method) (CFLLimit method) (CheckIterationEstimatorNonMPI method) (ConvergenceController method) (EstimateContractionFactor method) (EstimateEmbeddedError method) (EstimateEmbeddedErrorCollocation method) (EstimateExtrapolationErrorBase method) (EstimateExtrapolationErrorNonMPI method) (InterpolateBetweenRestarts method) setupGenerator() (Sweeper method) shape (SpectralHelper property) show_residual_across_simulation() (in module helpers.visualization_tools) Smat (CollBase attribute) snes (petsc_fisher_multiimplicit attribute) (petsc_grayscott_multiimplicit attribute) snes_itercount (petsc_grayscott_multiimplicit attribute) snes_ncalls (petsc_grayscott_multiimplicit attribute) solve_system() (acoustic_1d_imex method) (advectiondiffusion1d_imex method) (advectiondiffusion1d_implicit method) (allencahn2d_imex method), [1] (allencahn2d_imex_stab method), [1] (allencahn_front_finel method) (allencahn_front_fullyimplicit method) (allencahn_front_semiimplicit method) (allencahn_fullyimplicit method), [1] (allencahn_periodic_fullyimplicit method) (allencahn_periodic_semiimplicit method) (allencahn_semiimplicit method), [1] (allencahn_semiimplicit_v2 method), [1] (allencahn_temp_imex method) (auzinger method) (battery method) (battery_implicit method) (battery_n_capacitors method) (boussinesq_2d_imex method) (Brusselator method) (buck_converter method) (ChemicalReaction3Var method) (DiscontinuousTestODE method) (ExactDiscontinuousTestODE method) (fenics_grayscott method) (fenics_heat method) (fenics_heat_mass method) (fenics_heat_mass_timebc method) (fenics_vortex_2d method) (fenics_vortex_2d_mass method) (generalized_fisher method) (GenericNDimFinDiff method) (GenericSpectralLinear method) (grayscott_imex_diffusion method) (heat2d_petsc_forced method) (heatNd_forced method) (IMEX_Laplacian_MPIFFT method) (JacobiElliptic method) (Kaps method) (logistics_equation method) (LorenzAttractor method) (nonlinear_ODE_1 method) (nonlinearschroedinger_fully_implicit method) (petsc_fisher_fullyimplicit method) (petsc_fisher_semiimplicit method) (petsc_grayscott_fullyimplicit method) (petsc_grayscott_semiimplicit method) (piline method) (polynomial_testequation method) (ProtheroRobinson method) (ProtheroRobinsonAutonomous method) (Quench method) (QuenchIMEX method) (swfw_scalar method) (testequation0d method) (vanderpol method)

solve_system_1() (allencahn_multiimplicit method), [1] (allencahn_multiimplicit_v2 method), [1] (allencahn_periodic_multiimplicit method) (grayscott_mi_diffusion method) (grayscott_mi_linear method) (petsc_fisher_multiimplicit method) (petsc_grayscott_multiimplicit method) solve_system_2() (allencahn_multiimplicit method), [1] (allencahn_multiimplicit_v2 method), [1] (allencahn_periodic_multiimplicit method) (grayscott_mi_diffusion method) (grayscott_mi_linear method) (petsc_fisher_multiimplicit method) (petsc_grayscott_multiimplicit method) sort_stats() (in module helpers.stats_helper) SpaceTransfer (class in core.space_transfer) sparse_lib (SpectralHelper attribute) (SpectralHelper1D attribute) spectral (allencahn_temp_imex attribute) (GenericSpectralLinear attribute) SpectralHelper (class in helpers.spectral_helper) SpectralHelper1D (class in helpers.spectral_helper) SplitExplicit (class in implementations.problem_classes.boussinesq_helpers.standard_integrators) spread() (controller_MPI method) (controller_nonMPI method) SpreadStepSizesBlockwise (class in implementations.convergence_controller_classes.spread_step_sizes) SpreadStepSizesBlockwiseMPI (class in implementations.convergence_controller_classes.spread_step_sizes) SpreadStepSizesBlockwiseNonMPI (class in implementations.convergence_controller_classes.spread_step_sizes) SQ (boris_2nd_order attribute) ST (boris_2nd_order attribute) Status (class in core.convergence_controller) status (Level attribute) (Step attribute) Step (class in core.step) StepSizeLimiter (class in implementations.convergence_controller_classes.step_size_limiter) StepSizeRounding (class in implementations.convergence_controller_classes.step_size_limiter) StepSizeSlopeLimiter (class in implementations.convergence_controller_classes.step_size_limiter) StopAtMaxRuntime (class in implementations.convergence_controller_classes.crash) StopAtNan (class in implementations.convergence_controller_classes.crash) store_values() (EstimateExtrapolationErrorBase method) storeAndCheck() (DataChecker method) StoreUOld (class in implementations.convergence_controller_classes.store_uold) sweep (Entry attribute) (Level property) Sweeper (class in core.sweeper) SweeperMPI (class in implementations.sweeper_classes.generic_implicit_MPI) swfw_scalar (class in implementations.problem_classes.FastWaveSlowWave_0D) switch_A (battery_n_capacitors attribute) switch_f (battery_n_capacitors attribute) switch_sweeper() (AdaptiveCollocation method) Sx (boris_2nd_order attribute)

T

t_switch (battery_n_capacitors attribute) (DiscontinuousTestODE attribute) t_switch_exact (DiscontinuousTestODE attribute) tag (Level property) tau (Level attribute) testequation0d (class in implementations.problem_classes.TestEquation_0D) time (Entry attribute) (Level property) (Step property) timestep() (bdf2 method), [1] (dirk method), [1] (rk_imex method), [1] (SplitExplicit method) (trapezoidal method), [1]

tleft (CollBase attribute) TM (allencahn_temp_imex attribute) transfer() (Step method) TransferError transform() (ChebychevHelper method) (FFTHelper method) (SpectralHelper method) transform_single_component() (SpectralHelper method) trapezoidal (class in implementations.problem_classes.acoustic_helpers.standard_integrators) (class in implementations.problem_classes.boussinesq_helpers.standard_integrators) trigger_restart_upon_nonconvergence() (AdaptivityForConvergedCollocationProblems method) tright (CollBase attribute) type (Entry attribute)

U

u (Level attribute) u_exact() (acoustic_1d_imex method) (advectiondiffusion1d_imex method) (advectionNd method) (allencahn2d_imex method), [1] (allencahn_front_fullyimplicit method) (allencahn_fullyimplicit method), [1] (allencahn_imex method) (allencahn_periodic_fullyimplicit method) (allencahn_semiimplicit method) (allencahn_temp_imex method) (auzinger method) (battery method) (battery_n_capacitors method) (boussinesq_2d_imex method) (Brusselator method) (buck_converter method) (Burgers1D method) (Burgers2D method) (ChemicalReaction3Var method) (DiscontinuousTestODE method) (fenics_grayscott method) (fenics_heat method) (fenics_heat_mass_timebc method) (fenics_vortex_2d method) (fermi_pasta_ulam_tsingou method) (full_solar_system method) (generalized_fisher method) (grayscott_imex_diffusion method) (harmonic_oscillator method) (Heat1DChebychev method) (Heat1DUltraspherical method) (heat2d_petsc_forced method) (Heat2DChebychev method) (Heat2DUltraspherical method) (heatNd_forced method), [1] (heatNd_unforced method), [1] (henon_heiles method) (JacobiElliptic method) (Kaps method) (logistics_equation method) (LorenzAttractor method) (nonlinear_ODE_1 method) (nonlinearschroedinger_imex method) (outer_solar_system method) (penningtrap method) (petsc_fisher_multiimplicit method) (petsc_grayscott_multiimplicit method) (piline method) (polynomial_testequation method) (ProtheroRobinson method) (ProtheroRobinsonAutonomous method) (Quench method) (QuenchIMEX method) (RayleighBenard method) (swfw_scalar method) (testequation0d method) (vanderpol method)

u_init (Problem property) (SpectralHelper property) u_init() (harmonic_oscillator method) (penningtrap method) u_init_forward (SpectralHelper property) uend (Level attribute) uext (allencahn_front_fullyimplicit attribute) UltrasphericalHelper (class in helpers.spectral_helper) unflatten() (in module implementations.problem_classes.boussinesq_helpers.unflatten) UnlockError uold (Level attribute) update() (Cache method) update_nodes() (boris_2nd_order method) (explicit method) (generic_implicit method) (generic_implicit_MPI method) (imex_1st_order method) (imex_1st_order_mass method) (imex_1st_order_MPI method) (multi_implicit method) (MultiStep method) (RungeKutta method) (RungeKuttaIMEX method) (RungeKuttaNystrom method) (Sweeper method) (verlet method) updateVariableCoeffs() (Sweeper method) useGPU (SpectralHelper attribute) (SpectralHelper1D attribute)

V

V (fenics_grayscott attribute) (fenics_heat attribute) (fenics_heat_mass attribute) (fenics_heat_mass_timebc attribute) (fenics_vortex_2d attribute) (fenics_vortex_2d_mass attribute) (SpectralHelper property)

values (fenics_mesh attribute) vanderpol (class in implementations.problem_classes.Van_der_Pol_implicit) vel (particles attribute) Velocity_Verlet (class in implementations.sweeper_classes.Runge_Kutta_Nystrom) verlet (class in implementations.sweeper_classes.verlet) VerletLin() (SplitExplicit method)

W

w (fenics_grayscott attribute) w1 (fenics_grayscott attribute) w2 (fenics_grayscott attribute) wait_with_interrupt() (controller_MPI method) weights (ARK2 attribute) (ARK3 attribute) (ARK32 attribute) (ARK324L2SAERK attribute) (ARK54 attribute) (ARK548L2SA attribute) (ARK548L2SAERK attribute) (ARK548L2SAESDIRK2 attribute) (BackwardEuler attribute) (Cash_Karp attribute) (CollBase attribute) (CrankNicolson attribute) (DIRK43 attribute) (DIRK43_2 attribute) (EDIRK4 attribute) (ESDIRK43 attribute) (ESDIRK53 attribute) (ExplicitMidpointMethod attribute) (ForwardEuler attribute) (Heun_Euler attribute) (IMEXEuler attribute) (ImplicitMidpointMethod attribute) (RK4 attribute) (RKN attribute) (RungeKutta attribute) (Velocity_Verlet attribute)

weights_bar (RKN attribute) (RungeKuttaNystrom attribute) (Velocity_Verlet attribute) weights_explicit (ARK2 attribute) (ARK3 attribute) (RungeKuttaIMEX attribute) welcome_message() (Controller method) work_counter (LorenzAttractor attribute) (penningtrap attribute) work_counters (allencahn_front_fullyimplicit attribute) (allencahn_periodic_fullyimplicit attribute) (battery_implicit attribute) (DiscontinuousTestODE attribute) (GenericSpectralLinear attribute) (vanderpol attribute) WorkCounter (class in core.problem) writeToJSON() (DataChecker method)

X

X (allencahn_imex attribute) (allencahn_temp_imex attribute) (grayscott_imex_diffusion attribute) (grayscott_mi_diffusion attribute) (IMEX_Laplacian_MPIFFT attribute) (nonlinearschroedinger_imex attribute) x0 (SpectralHelper1D attribute) x1 (SpectralHelper1D attribute) xp (IMEX_Laplacian_MPIFFT attribute) (mesh attribute) (polynomial_testequation attribute) (SpectralHelper attribute) (SpectralHelper1D attribute) (testequation0d attribute)

xsp (testequation0d attribute) xv (Quench attribute) xvalues (advectiondiffusion1d_imex attribute) (allencahn2d_imex attribute), [1] (allencahn2d_imex_stab attribute), [1] (allencahn_front_fullyimplicit attribute) (allencahn_fullyimplicit attribute), [1] (allencahn_periodic_fullyimplicit attribute) (fermi_pasta_ulam_tsingou attribute) (GenericNDimFinDiff attribute) xx (boussinesq_2d_imex attribute)

Z

zz (boussinesq_2d_imex attribute)